FORE Systems Professor of Computer Science, Ray & Stephanie Lane Computational Biology Department, Machine Learning Department
Address:
Ray and Stephanie Lane Computational Biology Department, SCS
Â鶹´å
5000 Forbes Avenue
Pittsburgh, PA 15213
Work Phone: 412-268-8595
Administrative Assistant: Ally Ricarte
Dr. Bar-Joseph’s work focuses on the analysis and integration of static and temporal high throughput biological data for systems biology. Based primarily on methods from machine learning, his group develops computational solutions to problems ranging from experimental design to data analysis, pattern recognition and the reconstruction of dynamic biological networks. Bar-Joseph is currently leading a large center, part of the HuBMAP NIH consortium, focused on developing computational methods to help build a detailed 3D map of the human body. He has also worked on improving algorithms for distributed computational networks by relying on our increased understanding of how biological systems operate and what makes them robust and adaptable.
Lab Members
Sean Donahue
Research Programmer
Euxhen Hasanaj
Ph.D. Student
Matt Ruffalo
Systems Scientist
Highlighted Publications
Q. Song, J. Wang and Z. Bar-JosephGenome Biology. , 23, 150 2022
E. Hasanaj, J. Wang, A. Sarathi, J. Ding and Z. Bar-Joseph Nature Communications. , 13 (1), 1-6, 2022
J. Lugo-Martinez, S. Xu, J. Levesque, D. Gallagher, L.A. Parker, J. Neu, C.J. Stewart, J. E. Berrington, N.D. Embleton, G. Young, K.E. Gregory, M. Good, A. Tandon, D. Genetti, T. Warren, Z. Bar-Joseph. Journal of Biomedical Informatics , in press, 2022
D. Li, J. Ding, Z, Bar-Joseph
Genome Research, in press, 2022. Previous version in Proceedings of the 26th Annual International Conference on Research in Computational Molecular Biology (RECOMB) , pages 349-352, 2022
D. Li, J.J. Velazquez, J. Ding, J. Hislop, M.R. Ebrahimkhani, Z, Bar-Joseph Genome Biology. , 23, 73, 2022
M.T. Dayao, M. Brusko, C. Wasserfall, and Z. Bar-Joseph Nature Communications. , 13 (1), 1-10, 2022
J. Ding, N. Sharon, Z. Bar-Joseph
Nat Rev Gene. , 23 (6), 355-368, 2022